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Rhodium in PDB 3gsj: A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch

Protein crystallography data

The structure of A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch, PDB code: 3gsj was solved by B.M.Zeglis, V.C.Pierre, J.T.Kaiser, J.K.Barton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.59 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 39.020, 39.020, 57.420, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 21.3

Other elements in 3gsj:

The structure of A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Rhodium Binding Sites:

The binding sites of Rhodium atom in the A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch (pdb code 3gsj). This binding sites where shown within 5.0 Angstroms radius around Rhodium atom.
In total 2 binding sites of Rhodium where determined in the A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch, PDB code: 3gsj:
Jump to Rhodium binding site number: 1; 2;

Rhodium binding site 1 out of 2 in 3gsj

Go back to Rhodium Binding Sites List in 3gsj
Rhodium binding site 1 out of 2 in the A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch


Mono view


Stereo pair view

A full contact list of Rhodium with other atoms in the Rh binding site number 1 of A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rh2001

b:22.7
occ:1.00
RH A:R1C2001 0.0 22.7 1.0
N5 A:R1C2001 1.8 18.4 1.0
N6 A:R1C2001 1.8 19.1 1.0
N3 A:R1C2001 1.9 25.9 1.0
N4 A:R1C2001 1.9 23.4 1.0
N2 A:R1C2001 1.9 22.3 1.0
N1 A:R1C2001 2.0 20.5 1.0
C22 A:R1C2001 2.8 18.2 1.0
C15 A:R1C2001 2.8 25.9 1.0
C16 A:R1C2001 2.8 26.9 1.0
C21 A:R1C2001 2.8 18.6 1.0
C5 A:R1C2001 2.9 20.6 1.0
C6 A:R1C2001 2.9 20.0 1.0
C1 A:R1C2001 2.9 20.4 1.0
C20 A:R1C2001 3.0 23.9 1.0
C10 A:R1C2001 3.0 23.0 1.0
C11 A:R1C2001 3.0 23.9 1.0
O A:HOH58 4.1 43.1 1.0
C14 A:R1C2001 4.2 24.9 1.0
C17 A:R1C2001 4.2 26.9 1.0
C23 A:R1C2001 4.2 17.7 1.0
C19 A:R1C2001 4.2 26.3 1.0
C4 A:R1C2001 4.2 21.6 1.0
C2 A:R1C2001 4.3 22.5 1.0
C38 A:R1C2001 4.3 19.1 1.0
C7 A:R1C2001 4.3 23.2 1.0
C12 A:R1C2001 4.3 26.0 1.0
C9 A:R1C2001 4.3 24.0 1.0
O A:HOH35 4.3 37.7 1.0
C25 A:R1C2001 4.7 18.9 1.0
C18 A:R1C2001 4.8 25.4 1.0
C13 A:R1C2001 4.8 24.5 1.0
C3 A:R1C2001 4.8 21.5 1.0
C8 A:R1C2001 4.9 22.0 1.0
O A:HOH14 4.9 31.6 1.0
C24 A:R1C2001 5.0 19.1 1.0

Rhodium binding site 2 out of 2 in 3gsj

Go back to Rhodium Binding Sites List in 3gsj
Rhodium binding site 2 out of 2 in the A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch


Mono view


Stereo pair view

A full contact list of Rhodium with other atoms in the Rh binding site number 2 of A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rh2002

b:25.1
occ:0.50
RH A:R1C2002 0.0 25.1 0.5
N6 A:R1C2002 1.8 22.8 0.5
N5 A:R1C2002 1.8 22.5 0.5
N3 A:R1C2002 1.8 23.1 0.5
N2 A:R1C2002 1.8 24.4 0.5
N4 A:R1C2002 1.9 24.3 0.5
N1 A:R1C2002 1.9 23.7 0.5
C22 A:R1C2002 2.7 22.0 0.5
C21 A:R1C2002 2.7 22.2 0.5
C15 A:R1C2002 2.7 24.9 0.5
C16 A:R1C2002 2.8 22.2 0.5
C6 A:R1C2002 2.8 25.1 0.5
C5 A:R1C2002 2.8 22.7 0.5
C10 A:R1C2002 2.9 22.8 0.5
C11 A:R1C2002 2.9 22.4 0.5
C1 A:R1C2002 2.9 24.0 0.5
C20 A:R1C2002 3.0 23.1 0.5
C14 A:R1C2002 4.1 22.7 0.5
C7 A:R1C2002 4.1 22.9 0.5
C17 A:R1C2002 4.1 23.0 0.5
C23 A:R1C2002 4.2 21.7 0.5
C9 A:R1C2002 4.2 23.8 0.5
C12 A:R1C2002 4.2 22.8 0.5
C4 A:R1C2002 4.2 23.1 0.5
C38 A:R1C2002 4.2 21.6 0.5
C2 A:R1C2002 4.2 23.0 0.5
C19 A:R1C2002 4.3 22.8 0.5
C13 A:R1C2002 4.7 22.7 0.5
C8 A:R1C2002 4.7 23.0 0.5
C18 A:R1C2002 4.7 22.5 0.5
C3 A:R1C2002 4.7 24.0 0.5
O A:HOH68 4.8 38.8 1.0
C25 A:R1C2002 4.8 22.5 0.5
C37 A:R1C2002 4.9 21.9 0.5
C24 A:R1C2002 5.0 21.8 0.5

Reference:

B.M.Zeglis, V.C.Pierre, J.T.Kaiser, J.K.Barton. A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch: General Architecture of the Metalloinsertion Binding Mode Biochemistry V. 48 4247 2009.
ISSN: ISSN 0006-2960
PubMed: 19374348
DOI: 10.1021/BI900194E
Page generated: Mon Jan 25 16:02:13 2021

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