Rhodium in PDB 1idw: Structure of the Hybrid Rna/Dna R-Gcuucggc-D[Cl]U in Presence of Rh(NH3)6+++

The structure of Structure of the Hybrid Rna/Dna R-Gcuucggc-D[Cl]U in Presence of Rh(NH3)6+++, PDB code: 1idw was solved by W.Cruse, P.Saludjian, A.Neuman, T.Prange, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	6.00 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	53.820, 19.380, 50.300, 90.00, 109.90, 90.00
R / Rfree (%)	17.2 / 20.2

The structure of Structure of the Hybrid Rna/Dna R-Gcuucggc-D[Cl]U in Presence of Rh(NH3)6+++ also contains other interesting chemical elements:

Chlorine

(Cl)

6 atoms

The binding sites of Rhodium atom in the Structure of the Hybrid Rna/Dna R-Gcuucggc-D[Cl]U in Presence of Rh(NH3)6+++ (pdb code 1idw). This binding sites where shown within 5.0 Angstroms radius around Rhodium atom.
In total 2 binding sites of Rhodium where determined in the Structure of the Hybrid Rna/Dna R-Gcuucggc-D[Cl]U in Presence of Rh(NH3)6+++, PDB code: 1idw:
Jump to Rhodium binding site number: 1; 2;

Rhodium binding site 1 out of 2 in the Structure of the Hybrid Rna/Dna R-Gcuucggc-D[Cl]U in Presence of Rh(NH3)6+++


Mono view


Stereo pair view

A full contact list of Rhodium with other atoms in the Rh binding site number 1 of Structure of the Hybrid Rna/Dna R-Gcuucggc-D[Cl]U in Presence of Rh(NH3)6+++ within 5.0Å range: probe atom residue distance (Å) B Occ A:Rh11 b:15.8 occ:1.00 RH A:RHD11 0.0 15.8 1.0 N1 A:RHD11 2.0 14.6 1.0 N5 A:RHD11 2.0 33.7 1.0 N4 A:RHD11 2.0 14.2 1.0 N2 A:RHD11 2.0 9.2 1.0 N6 A:RHD11 2.0 35.7 1.0 N3 A:RHD11 2.0 22.1 1.0 N7 A:G6 4.0 7.6 1.0 OP2 A:G6 4.0 16.0 1.0 OP2 A:C5 4.2 14.6 1.0 O A:HOH106 4.2 17.0 1.0 O A:HOH137 4.3 31.0 1.0 O6 A:G7 4.4 7.0 1.0 N7 A:G7 4.5 9.7 1.0 C8 A:G6 4.7 10.8 1.0 O6 A:G6 4.9 8.3 1.0 C5 A:G6 4.9 8.6 1.0

Rhodium binding site 2 out of 2 in the Structure of the Hybrid Rna/Dna R-Gcuucggc-D[Cl]U in Presence of Rh(NH3)6+++


Mono view


Stereo pair view

A full contact list of Rhodium with other atoms in the Rh binding site number 2 of Structure of the Hybrid Rna/Dna R-Gcuucggc-D[Cl]U in Presence of Rh(NH3)6+++ within 5.0Å range: probe atom residue distance (Å) B Occ A:Rh12 b:21.5 occ:1.00 RH A:RHD12 0.0 21.5 1.0 N3 A:RHD12 2.0 21.0 1.0 N4 A:RHD12 2.0 23.0 1.0 N5 A:RHD12 2.0 16.1 1.0 N2 A:RHD12 2.0 12.2 1.0 N6 A:RHD12 2.0 23.7 1.0 N1 A:RHD12 2.0 19.4 1.0

W.Cruse, P.Saludjian, A.Neuman, T.Prange. Destabilizing Effect of A Fluorouracil Extra Base in A Hybrid Rna Duplex Compared with Bromo and Chloro Analogues Acta Crystallogr.,Sect.D V. 57 1609 2001.
ISSN: ISSN 0907-4449
PubMed: 11679725
DOI: 10.1107/S0907444901012318