Rhodium in PDB 1id9: Structure of the Hybrid Rna/Dna R-Gcuucggc-D[F]U in Presence of Rh(NH3)6+++

The structure of Structure of the Hybrid Rna/Dna R-Gcuucggc-D[F]U in Presence of Rh(NH3)6+++, PDB code: 1id9 was solved by W.Cruse, P.Saludjian, A.Neuman, T.Prange, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	11.00 / 1.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	53.730, 19.390, 45.830, 90.00, 105.70, 90.00
R / Rfree (%)	15.3 / 19.5

The structure of Structure of the Hybrid Rna/Dna R-Gcuucggc-D[F]U in Presence of Rh(NH3)6+++ also contains other interesting chemical elements:

Fluorine	(F)	3 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Rhodium atom in the Structure of the Hybrid Rna/Dna R-Gcuucggc-D[F]U in Presence of Rh(NH3)6+++ (pdb code 1id9). This binding sites where shown within 5.0 Angstroms radius around Rhodium atom.
In total 2 binding sites of Rhodium where determined in the Structure of the Hybrid Rna/Dna R-Gcuucggc-D[F]U in Presence of Rh(NH3)6+++, PDB code: 1id9:
Jump to Rhodium binding site number: 1; 2;

Rhodium binding site 1 out of 2 in the Structure of the Hybrid Rna/Dna R-Gcuucggc-D[F]U in Presence of Rh(NH3)6+++


Mono view


Stereo pair view

A full contact list of Rhodium with other atoms in the Rh binding site number 1 of Structure of the Hybrid Rna/Dna R-Gcuucggc-D[F]U in Presence of Rh(NH3)6+++ within 5.0Å range: probe atom residue distance (Å) B Occ A:Rh11 b:15.2 occ:1.00 RH A:RHD11 0.0 15.2 1.0 N6 A:RHD11 2.2 15.2 1.0 N2 A:RHD11 2.3 20.2 1.0 N5 A:RHD11 2.3 29.8 1.0 N3 A:RHD11 2.3 31.6 1.0 N4 A:RHD11 2.3 23.1 1.0 N1 A:RHD11 2.3 30.1 1.0 O A:HOH119 3.9 24.1 1.0 N7 A:G6 3.9 8.9 1.0 OP2 A:G6 4.1 22.1 1.0 O A:HOH117 4.2 14.2 1.0 OP2 A:C5 4.3 14.3 1.0 O6 A:G7 4.3 11.6 1.0 N7 A:G7 4.5 11.8 1.0 C8 A:G6 4.7 9.9 1.0 O A:HOH139 4.7 44.4 1.0 O A:HOH138 4.9 15.8 1.0 C5 A:G6 4.9 6.3 1.0 O6 A:G6 4.9 10.3 1.0

Rhodium binding site 2 out of 2 in the Structure of the Hybrid Rna/Dna R-Gcuucggc-D[F]U in Presence of Rh(NH3)6+++


Mono view


Stereo pair view

A full contact list of Rhodium with other atoms in the Rh binding site number 2 of Structure of the Hybrid Rna/Dna R-Gcuucggc-D[F]U in Presence of Rh(NH3)6+++ within 5.0Å range: probe atom residue distance (Å) B Occ A:Rh12 b:25.3 occ:1.00 RH A:RHD12 0.0 25.3 1.0 N5 A:RHD12 2.2 27.3 1.0 N2 A:RHD12 2.2 17.0 1.0 N3 A:RHD12 2.2 23.7 1.0 N4 A:RHD12 2.3 20.0 1.0 N1 A:RHD12 2.3 32.1 1.0 N6 A:RHD12 2.3 24.6 1.0

W.Cruse, P.Saludjian, A.Neuman, T.Prange. Destabilizing Effect of A Fluorouracil Extra Base in A Hybrid Rna Duplex Compared with Bromo and Chloro Analogues. Acta Crystallogr.,Sect.D V. 57 1609 2001.
ISSN: ISSN 0907-4449
PubMed: 11679725
DOI: 10.1107/S0907444901012318