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Rhodium in PDB 165d: The Structure of A Mispaired Rna Double Helix at 1.6 Angstroms Resolution and Implications For the Prediction of Rna Secondary Structure

Protein crystallography data

The structure of The Structure of A Mispaired Rna Double Helix at 1.6 Angstroms Resolution and Implications For the Prediction of Rna Secondary Structure, PDB code: 165d was solved by W.Cruse, P.Saludjian, E.Biala, P.Strazewski, T.Prange, O.Kennard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.55
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 53.800, 19.400, 50.140, 90.00, 109.90, 90.00
R / Rfree (%) 18 / n/a

Other elements in 165d:

The structure of The Structure of A Mispaired Rna Double Helix at 1.6 Angstroms Resolution and Implications For the Prediction of Rna Secondary Structure also contains other interesting chemical elements:

Bromine (Br) 3 atoms

Rhodium Binding Sites:

The binding sites of Rhodium atom in the The Structure of A Mispaired Rna Double Helix at 1.6 Angstroms Resolution and Implications For the Prediction of Rna Secondary Structure (pdb code 165d). This binding sites where shown within 5.0 Angstroms radius around Rhodium atom.
In total 4 binding sites of Rhodium where determined in the The Structure of A Mispaired Rna Double Helix at 1.6 Angstroms Resolution and Implications For the Prediction of Rna Secondary Structure, PDB code: 165d:
Jump to Rhodium binding site number: 1; 2; 3; 4;

Rhodium binding site 1 out of 4 in 165d

Go back to Rhodium Binding Sites List in 165d
Rhodium binding site 1 out of 4 in the The Structure of A Mispaired Rna Double Helix at 1.6 Angstroms Resolution and Implications For the Prediction of Rna Secondary Structure


Mono view


Stereo pair view

A full contact list of Rhodium with other atoms in the Rh binding site number 1 of The Structure of A Mispaired Rna Double Helix at 1.6 Angstroms Resolution and Implications For the Prediction of Rna Secondary Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rh19

b:12.7
occ:1.00
RH A:RHD19 0.0 12.7 1.0
N6 A:RHD19 2.1 13.2 1.0
N2 A:RHD19 2.1 12.9 1.0
N3 A:RHD19 2.1 13.3 1.0
N1 A:RHD19 2.1 13.0 1.0
N5 A:RHD19 2.1 13.4 1.0
N4 A:RHD19 2.1 13.1 1.0
OP2 A:G6 3.9 5.5 1.0
N7 A:G6 3.9 4.5 1.0
O B:HOH72 4.1 30.2 1.0
O A:HOH59 4.1 21.5 1.0
OP2 A:C5 4.2 5.6 1.0
O6 A:G7 4.2 4.8 1.0
O A:HOH26 4.2 16.9 1.0
N7 A:G7 4.6 5.1 1.0
C8 A:G6 4.7 4.4 1.0
O6 A:G6 4.8 4.2 1.0
C5 A:G6 4.9 4.2 1.0

Rhodium binding site 2 out of 4 in 165d

Go back to Rhodium Binding Sites List in 165d
Rhodium binding site 2 out of 4 in the The Structure of A Mispaired Rna Double Helix at 1.6 Angstroms Resolution and Implications For the Prediction of Rna Secondary Structure


Mono view


Stereo pair view

A full contact list of Rhodium with other atoms in the Rh binding site number 2 of The Structure of A Mispaired Rna Double Helix at 1.6 Angstroms Resolution and Implications For the Prediction of Rna Secondary Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rh20

b:16.1
occ:1.00
RH A:RHD20 0.0 16.1 1.0
N5 A:RHD20 2.1 16.1 1.0
N6 A:RHD20 2.1 16.5 1.0
N1 A:RHD20 2.1 16.4 1.0
N4 A:RHD20 2.1 16.3 1.0
N3 A:RHD20 2.1 16.3 1.0
N2 A:RHD20 2.1 16.2 1.0

Rhodium binding site 3 out of 4 in 165d

Go back to Rhodium Binding Sites List in 165d
Rhodium binding site 3 out of 4 in the The Structure of A Mispaired Rna Double Helix at 1.6 Angstroms Resolution and Implications For the Prediction of Rna Secondary Structure


Mono view


Stereo pair view

A full contact list of Rhodium with other atoms in the Rh binding site number 3 of The Structure of A Mispaired Rna Double Helix at 1.6 Angstroms Resolution and Implications For the Prediction of Rna Secondary Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rh22

b:14.6
occ:0.30
RH A:RHD22 0.0 14.6 0.3
N6 A:RHD22 2.1 14.6 0.3
N3 A:RHD22 2.1 14.6 0.3
N2 A:RHD22 2.1 14.5 0.3
N4 A:RHD22 2.1 14.6 0.3
N1 A:RHD22 2.1 14.6 0.3
N5 A:RHD22 2.1 14.6 0.3
O4 A:BRU9 4.3 12.8 1.0
N3 A:BRU9 4.9 11.1 1.0

Rhodium binding site 4 out of 4 in 165d

Go back to Rhodium Binding Sites List in 165d
Rhodium binding site 4 out of 4 in the The Structure of A Mispaired Rna Double Helix at 1.6 Angstroms Resolution and Implications For the Prediction of Rna Secondary Structure


Mono view


Stereo pair view

A full contact list of Rhodium with other atoms in the Rh binding site number 4 of The Structure of A Mispaired Rna Double Helix at 1.6 Angstroms Resolution and Implications For the Prediction of Rna Secondary Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Rh21

b:14.5
occ:0.35
RH B:RHD21 0.0 14.5 0.3
N2 B:RHD21 2.1 14.4 0.3
N6 B:RHD21 2.1 14.2 0.3
N1 B:RHD21 2.1 14.3 0.3
N3 B:RHD21 2.1 14.3 0.3
N4 B:RHD21 2.1 14.2 0.3
N5 B:RHD21 2.1 14.3 0.3
N7 B:G15 3.9 10.9 1.0
O B:HOH34 4.1 14.7 1.0
O6 B:G15 4.2 10.4 1.0
O6 B:G16 4.4 13.0 1.0
O B:HOH46 4.4 30.6 1.0
C5 B:G15 4.8 10.7 1.0
C6 B:G15 4.9 10.7 1.0
C8 B:G15 4.9 11.2 1.0

Reference:

W.B.Cruse, P.Saludjian, E.Biala, P.Strazewski, T.Prange, O.Kennard. Structure of A Mispaired Rna Double Helix at 1.6-A Resolution and Implications For the Prediction of Rna Secondary Structure. Proc.Natl.Acad.Sci.Usa V. 91 4160 1994.
ISSN: ISSN 0027-8424
PubMed: 7514296
DOI: 10.1073/PNAS.91.10.4160
Page generated: Wed Dec 16 02:07:33 2020

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