Rhodium in PDB 9dbw: Rh-Bound Structure of Computationally Designed Homotetramer PW1

The structure of Rh-Bound Structure of Computationally Designed Homotetramer PW1, PDB code: 9dbw was solved by A.M.Hoffnagle, F.A.Tezcan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.65 / 2.10
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	63.15, 63.15, 37.6, 90, 90, 90
R / Rfree (%)	18.9 / 26

The binding sites of Rhodium atom in the Rh-Bound Structure of Computationally Designed Homotetramer PW1 (pdb code 9dbw). This binding sites where shown within 5.0 Angstroms radius around Rhodium atom.
In total 2 binding sites of Rhodium where determined in the Rh-Bound Structure of Computationally Designed Homotetramer PW1, PDB code: 9dbw:
Jump to Rhodium binding site number: 1; 2;

Rhodium binding site 1 out of 2 in the Rh-Bound Structure of Computationally Designed Homotetramer PW1


Mono view


Stereo pair view

A full contact list of Rhodium with other atoms in the Rh binding site number 1 of Rh-Bound Structure of Computationally Designed Homotetramer PW1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Rh201 b:290.8 occ:0.25 OE2 A:GLU52 2.0 324.1 1.0 RH1 A:RH202 2.4 299.9 0.2 CD A:GLU52 2.9 277.4 1.0 OE1 A:GLU52 3.2 323.9 1.0 CG A:GLU52 4.1 179.8 1.0 NH1 A:ARG56 4.1 130.1 1.0

Rhodium binding site 2 out of 2 in the Rh-Bound Structure of Computationally Designed Homotetramer PW1


Mono view


Stereo pair view

A full contact list of Rhodium with other atoms in the Rh binding site number 2 of Rh-Bound Structure of Computationally Designed Homotetramer PW1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Rh202 b:299.9 occ:0.25 OE1 A:GLU52 2.0 323.9 1.0 RH1 A:RH201 2.4 290.8 0.2 OE2 A:GLU52 2.6 324.1 1.0 CD A:GLU52 2.6 277.4 1.0 CG A:GLU52 4.1 179.8 1.0 CB A:GLU52 4.7 91.8 1.0

A.M.Hoffnagle, C.Y.Tsai, F.A.Tezcan. Machine Learning-Guided Design of A Protein Assembly with A Synthetic Metal Center To Be Published.